guess_ill_instrument - try to determine Illumina instrument from FASTQ headers
guess_ill_instrument FASTQ_filename
This utility reads in a FASTQ file, either from STDIN or from the first argument on the command line, and tries to match the header fields for the first sequence to known patterns for specific instruments. It prints to STDOUT a single, tab-delimited line listing the detected platform (blank if not determined) and the source of detection -- either 'no_match', 'flowcell' if guessed from flowcell ID, 'instrument' if guessed from instrument ID, 'both' if guessed from both, or 'mismatch' if guessed from both but the guesses do not match.
None
Please submit bug reports to the issue tracker in the distribution repository.
Jeremy Volkening (jeremy.volkening@base2bio.com)
Copyright 2021-23 Jeremy Volkening
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.