fasta2phylip - convert FASTA multiple alignments to PHYLIP format
fasta2phylip --in <input.fa> [options]
Converts a multiple alignment from padded FASTA format to PHYLIP format
Requires the following non-core Perl libraries:
Path to input FASTA alignment (required)
Path to write output file to (default: STDOUT)
Line length to use for sequence wrapping
Write sequences as interleaved (default: false)
Enforce strict naming rules. Sequences IDs will be clipped to a maximum of nine characters and an error will be thrown if duplicate IDs (after clipping) are found.
Please submit bug reports to the issue tracker in the distribution repository.
Jeremy Volkening (jeremy.volkening@base2bio.com)
Copyright 2014-23 Jeremy Volkening
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.