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NAME

blast2diamond - convert BLAST+ formatted databases to DIAMOND databases

SYNOPSIS

blast2diamond --db <blast_db> --out <output_prefix>

DESCRIPTION

Converts a sequence database in BLAST+ format to a DIAMOND database.

PREREQUISITES

Requires the following binaries:

OPTIONS

--db prefix

Path to BLAST+ database prefix (or just prefix if path is defined as environment variable). This is the same as you would provide for a blast search.

--out prefix

Path (up to db prefix) of the location to write the DIAMOND database to.

CAVEATS AND BUGS

Please submit bug reports to the issue tracker in the distribution repository.

AUTHOR

Jeremy Volkening (jeremy.volkening@base2bio.com)

LICENSE AND COPYRIGHT

Copyright 2014-23 Jeremy Volkening

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

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